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» Indexing XML Data Stored in a Relational Database
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ECCB
2005
IEEE
14 years 1 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
BMCBI
2005
156views more  BMCBI 2005»
13 years 7 months ago
DynGO: a tool for visualizing and mining of Gene Ontology and its associations
Background: A large volume of data and information about genes and gene products has been stored in various molecular biology databases. A major challenge for knowledge discovery ...
Hongfang Liu, Zhang-Zhi Hu, Cathy H. Wu
BMCBI
2010
108views more  BMCBI 2010»
13 years 5 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
ICDE
2006
IEEE
178views Database» more  ICDE 2006»
14 years 9 months ago
Declarative Querying for Biological Sequences
The ongoing revolution in life sciences research is producing vast amounts of genetic and proteomic sequence data. Scientists want to pose increasingly complex queries on this dat...
Sandeep Tata, Jignesh M. Patel, James S. Friedman,...
ICDE
2006
IEEE
179views Database» more  ICDE 2006»
14 years 9 months ago
Distributed Evaluation of Continuous Equi-join Queries over Large Structured Overlay Networks
We study the problem of continuous relational query processing in Internet-scale overlay networks realized by distributed hash tables. We concentrate on the case of continuous two...
Stratos Idreos, Christos Tryfonopoulos, Manolis Ko...