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» Indexing and Retrieval for Genomic Databases
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BMCBI
2010
162views more  BMCBI 2010»
15 years 4 months ago
SNP-RFLPing 2: an updated and integrated PCR-RFLP tool for SNP genotyping
Background: PCR-restriction fragment length polymorphism (RFLP) assay is a cost-effective method for SNP genotyping and mutation detection, but the manual mining for restriction e...
Hsueh-Wei Chang, Yu-Huei Cheng, Li-Yeh Chuang, Che...
NAR
2008
91views more  NAR 2008»
15 years 4 months ago
GenBank
GenBank (R) is a comprehensive sequence database that contains publicly available DNA sequences for more than 119 000 different organisms, obtained primarily through the submissio...
Dennis A. Benson, Ilene Karsch-Mizrachi, David J. ...
EDBT
2009
ACM
184views Database» more  EDBT 2009»
15 years 11 months ago
Distributed similarity search in high dimensions using locality sensitive hashing
In this paper we consider distributed K-Nearest Neighbor (KNN) search and range query processing in high dimensional data. Our approach is based on Locality Sensitive Hashing (LSH...
Parisa Haghani, Sebastian Michel, Karl Aberer
BMCBI
2008
153views more  BMCBI 2008»
15 years 4 months ago
Version VI of the ESTree db: an improved tool for peach transcriptome analysis
Background: The ESTree database (db) is a collection of Prunus persica and Prunus dulcis EST sequences that in its current version encompasses 75,404 sequences from 3 almond and 1...
Barbara Lazzari, Andrea Caprera, Alberto Vecchiett...
CIKM
2009
Springer
15 years 10 months ago
A query model based on normalized log-likelihood
Leveraging information from relevance assessments has been proposed as an effective means for improving retrieval. We introduce a novel language modeling method which uses inform...
Edgar Meij, Wouter Weerkamp, Maarten de Rijke