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» Indexing and Searching a Mass Spectrometry Database
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BMCBI
2005
128views more  BMCBI 2005»
13 years 7 months ago
Transformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process
Background: Biological Mass Spectrometry is used to analyse peptides and proteins. A mass spectrum generates a list of measured mass to charge ratios and intensities of ionised pe...
Witold E. Wolski, Maciej Lalowski, Peter Martus, R...
TCBB
2011
13 years 2 months ago
A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data
—Protein identification is a key and essential step in mass spectrometry (MS) based proteome research. To date, there are many protein identification strategies that employ eithe...
Zengyou He, Can Yang, Weichuan Yu
BMCBI
2008
323views more  BMCBI 2008»
13 years 7 months ago
A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data
Background: Alternative splicing is an important gene regulation mechanism. It is estimated that about 74% of multi-exon human genes have alternative splicing. High throughput tan...
Fan Mo, Xu Hong, Feng Gao, Lin Du, Jun Wang, Gilbe...
BMEI
2008
IEEE
14 years 2 months ago
Comparison of ESI-MS Spectra in MassBank Database
Metabolomics is one of the most important topics in biology and medical science. In metabolomics, metabolites from biological samples are measured by mass spectrometry (MS) and th...
Hisayuki Horai, Masanori Arita, Takaaki Nishioka
BMCBI
2008
115views more  BMCBI 2008»
13 years 7 months ago
PARPST: a PARallel algorithm to find peptide sequence tags
Background: Protein identification is one of the most challenging problems in proteomics. Tandem mass spectrometry provides an important tool to handle the protein identification ...
Sara Brunetti, Elena Lodi, Elisa Mori, Maria Stell...