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» Inference of Isoforms from Short Sequence Reads
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BMCBI
2010
156views more  BMCBI 2010»
13 years 8 months ago
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
Background: High-throughput sequencing technologies, such as the Illumina Genome Analyzer, are powerful new tools for investigating a wide range of biological and medical question...
James H. Bullard, Elizabeth Purdom, Kasper D. Hans...
CSB
2004
IEEE
113views Bioinformatics» more  CSB 2004»
14 years 8 days ago
Shannon Information in Complete Genomes
Shannon information in the genomes of all completely sequenced prokaryotes and eukaryotes are measured in word lengths of two to ten letters. It is found that in a scale-dependent...
Chang-Heng Chang, Li-Ching Hsieh, Ta-Yuan Chen, Ho...
ALT
2009
Springer
14 years 5 months ago
Uncountable Automatic Classes and Learning
In this paper we consider uncountable classes recognizable by ω-automata and investigate suitable learning paradigms for them. In particular, the counterparts of explanatory, vac...
Sanjay Jain, Qinglong Luo, Pavel Semukhin, Frank S...
PAKDD
2005
ACM
160views Data Mining» more  PAKDD 2005»
14 years 2 months ago
Improving Mining Quality by Exploiting Data Dependency
The usefulness of the results produced by data mining methods can be critically impaired by several factors such as (1) low quality of data, including errors due to contamination, ...
Fang Chu, Yizhou Wang, Carlo Zaniolo, Douglas Stot...
BMCBI
2010
136views more  BMCBI 2010»
13 years 8 months ago
Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
Background: Tag-based techniques, such as SAGE, are commonly used to sample the mRNA pool of an organism's transcriptome. Incomplete digestion during the tag formation proces...
Russell L. Zaretzki, Michael A. Gilchrist, William...