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» Inferring Phylogenetic Trees Using Answer Set Programming
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RECOMB
2008
Springer
14 years 8 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
BMCBI
2006
108views more  BMCBI 2006»
13 years 8 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
AUSAI
2004
Springer
14 years 1 months ago
MML Inference of Oblique Decision Trees
We propose a multivariate decision tree inference scheme by using the minimum message length (MML) principle (Wallace and Boulton, 1968; Wallace and Dowe, 1999). The scheme uses MM...
Peter J. Tan, David L. Dowe
PCI
2005
Springer
14 years 1 months ago
Initial Experiences Porting a Bioinformatics Application to a Graphics Processor
Bioinformatics applications are one of the most relevant and compute-demanding applications today. While normally these applications are executed on clusters or dedicated parallel ...
Maria Charalambous, Pedro Trancoso, Alexandros Sta...
BMCBI
2010
110views more  BMCBI 2010»
13 years 8 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec