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» Inferring Phylogenetic Trees Using Answer Set Programming
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BIB
2008
88views more  BIB 2008»
13 years 8 months ago
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences
The Molecular Evolutionary Genetics Analysis (MEGA) software is a desktop application designed for comparative analysis of homologous gene sequences either from multigene families...
Sudhir Kumar, Masatoshi Nei, Joel Dudley, Koichiro...
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 2 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
WABI
2009
Springer
127views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Constructing Majority-Rule Supertrees
Background: Supertree methods combine the phylogenetic information from multiple partially-overlapping trees into a larger phylogenetic tree called a supertree. Several supertree ...
Jianrong Dong, David Fernández-Baca, Fred R...
BMCBI
2010
117views more  BMCBI 2010»
13 years 8 months ago
Using jackknife to assess the quality of gene order phylogenies
Background: In recent years, gene order data has attracted increasing attention from both biologists and computer scientists as a new type of data for phylogenetic analysis. If ge...
Jian Shi, Yiwei Zhang, Haiwei Luo, Jijun Tang
AAAI
2007
13 years 10 months ago
Recognizing Textual Entailment Using a Subsequence Kernel Method
We present a novel approach to recognizing Textual nt. Structural features are constructed from abstract tree descriptions, which are automatically extracted from syntactic depend...
Rui Wang 0005, Günter Neumann