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» Inferring Phylogenetic Trees Using Answer Set Programming
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ACM
14 years 8 days ago
Parallel Phylogenetic Inference
Recent advances in DNA sequencing technology have created large data sets upon which phylogenetic inference can be performed. However, current research is limited by the prohibiti...
Quinn Snell, Michael Whiting, Mark J. Clement, Dav...
BMCBI
2011
12 years 11 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
ENTCS
2008
150views more  ENTCS 2008»
13 years 8 months ago
Analyzing Security Scenarios Using Defence Trees and Answer Set Programming
Defence trees are used to represent attack and defence strategies in security scenarios; the aim in such scenarios is to select the best set of countermeasures that are able to st...
Stefano Bistarelli, Pamela Peretti, Irina Trubitsy...
NAR
2008
125views more  NAR 2008»
13 years 7 months ago
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
Phylogenetic analyses are central to many research areas in biology and typically involve the identification of homologous sequences, their multiple alignment, the phylogenetic re...
Alexis Dereeper, V. Guignon, G. Blanc, Stép...
ALGORITHMICA
2006
163views more  ALGORITHMICA 2006»
13 years 8 months ago
Building Large Phylogenetic Trees on Coarse-Grained Parallel Machines
Phylogenetic analysis is an area of computational biology concerned with the reconstruction of evolutionary relationships between organisms, genes, and gene families. Maximum likel...
Thomas M. Keane, Andrew J. Page, Thomas J. Naughto...