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» Inferring Phylogenetic Trees Using Answer Set Programming
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BMCBI
2011
13 years 2 months ago
iPhy: an integrated phylogenetic workbench for supermatrix analyses
Background: The increasing availability of molecular sequence data means that the accuracy of future phylogenetic studies is likely to by limited by systematic bias and taxon choi...
Martin O. Jones, Georgios D. Koutsovoulos, Mark L....
BMCBI
2006
112views more  BMCBI 2006»
13 years 8 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
KRDB
2003
111views Database» more  KRDB 2003»
13 years 9 months ago
A Framework for Answering Queries using Multiple Representation and Inference Techniques
The Polylog framework is designed to provide a language for efficiently automating complex queries of information represented in multiple formats. A Polylog program contains a set...
Nicholas L. Cassimatis
RTA
2010
Springer
13 years 11 months ago
Declarative Debugging of Missing Answers for Maude
Abstract. Declarative debugging is a semi-automatic technique that starts from an incorrect computation and locates a program fragment responsible for the error by building a tree ...
Adrián Riesco, Alberto Verdejo, Narciso Mar...
BMEI
2008
IEEE
14 years 2 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang