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PVLDB
2010
134views more  PVLDB 2010»
13 years 6 months ago
High-Performance Dynamic Pattern Matching over Disordered Streams
Current pattern-detection proposals for streaming data recognize the need to move beyond a simple regular-expression model over strictly ordered input. We continue in this directi...
Badrish Chandramouli, Jonathan Goldstein, David Ma...
BMCBI
2011
13 years 2 months ago
Logical Development of the Cell Ontology
Background: The Cell Ontology (CL) is an ontology for the representation of in vivo cell types. As biological ontologies such as the CL grow in complexity, they become increasingl...
Terrence F. Meehan, Anna Maria Masci, Amina Abdull...
BMCBI
2011
13 years 2 months ago
Flexible taxonomic assignment of ambiguous sequencing reads
Background: To characterize the diversity of bacterial populations in metagenomic studies, sequencing reads need to be accurately assigned to taxonomic units in a given reference ...
José Carlos Clemente, Jesper Jansson, Gabri...
BMCBI
2011
13 years 2 months ago
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning
Background: Accurate identification of protein domain boundaries is useful for protein structure determination and prediction. However, predicting protein domain boundaries from a...
Jesse Eickholt, Xin Deng, Jianlin Cheng
SIGMOD
2012
ACM
210views Database» more  SIGMOD 2012»
11 years 10 months ago
Interactive regret minimization
We study the notion of regret ratio proposed in [19] to deal with multi-criteria decision making in database systems. The regret minimization query proposed in [19] was shown to h...
Danupon Nanongkai, Ashwin Lall, Atish Das Sarma, K...