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ICDE
2004
IEEE
133views Database» more  ICDE 2004»
14 years 8 months ago
GenExplore: Interactive Exploration of Gene Interactions from Microarray Data
DNA Microarray provides a powerful basis for analysis of gene expression. Data mining methods such as clustering have been widely applied to microarray data to link genes that sho...
Yong Ye, Xintao Wu, Kalpathi R. Subramanian, Liyin...
BMCBI
2006
119views more  BMCBI 2006»
13 years 6 months ago
LS-NMF: A modified non-negative matrix factorization algorithm utilizing uncertainty estimates
Background: Non-negative matrix factorisation (NMF), a machine learning algorithm, has been applied to the analysis of microarray data. A key feature of NMF is the ability to iden...
Guoli Wang, Andrew V. Kossenkov, Michael F. Ochs
BMCBI
2010
135views more  BMCBI 2010»
13 years 6 months ago
Lists2Networks: Integrated analysis of gene/protein lists
Background: Systems biologists are faced with the difficultly of analyzing results from large-scale studies that profile the activity of many genes, RNAs and proteins, applied in ...
Alexander Lachmann, Avi Ma'ayan
AIIA
2005
Springer
14 years 8 days ago
Towards Fault-Tolerant Formal Concept Analysis
Given Boolean data sets which record properties of objects, Formal Concept Analysis is a well-known approach for knowledge discovery. Recent application domains, e.g., for very lar...
Ruggero G. Pensa, Jean-François Boulicaut
BMCBI
2011
12 years 10 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng