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BMCBI
2010
160views more  BMCBI 2010»
13 years 8 months ago
Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data
Background: Use of alternative gene promoters that drive widespread cell-type, tissue-type or developmental gene regulation in mammalian genomes is a common phenomenon. Chromatin ...
Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhat...
IPPS
2009
IEEE
14 years 3 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
COR
2008
164views more  COR 2008»
13 years 8 months ago
Observations in using parallel and sequential evolutionary algorithms for automatic software testing
In this paper we analyze the application of parallel and sequential evolutionary algorithms (EAs) to the automatic test data generation problem. The problem consists of automatica...
Enrique Alba, J. Francisco Chicano
HPCN
1997
Springer
14 years 20 days ago
Performance Evaluation of HPCN Applications
The performance attained by parallel programs executed on multiprocessor systems is largely in uenced both by the characteristics of the code and by those of the system architectu...
Alessandro P. Merlo
PROCEDIA
2010
154views more  PROCEDIA 2010»
13 years 3 months ago
Parallel computation of phylogenetic consensus trees
The field of bioinformatics is witnessing a rapid and overwhelming accumulation of molecular sequence data, predominantly driven by novel wet-lab sequencing techniques. This trend...
Andre J. Aberer, Nicholas D. Pattengale, Alexandro...