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» Interaction Models for Biochemical Reactions
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IPPS
2006
IEEE
14 years 1 months ago
Performance analysis of stochastic process algebra models using stochastic simulation
We present a translation of a generic stochastic process algebra model into a form suitable for stochastic simulation. By systematically generating rate equations from a process d...
Jeremy T. Bradley, Stephen T. Gilmore, Nigel Thoma...
BMCBI
2008
119views more  BMCBI 2008»
13 years 7 months ago
On deducing causality in metabolic networks
Background: Metabolic networks present a complex interconnected structure, whose understanding is in general a non-trivial task. Several formal approaches have been developed to s...
Chiara Bodei, Andrea Bracciali, Davide Chiarugi
KES
2007
Springer
14 years 1 months ago
A Hybrid Symbolic-Statistical Approach to Modeling Metabolic Networks
Biological systems consist of many components and interactions between them. In Systems Biology the principal problem is modeling complex biological systems and reconstructing inte...
Marenglen Biba, Stefano Ferilli, Nicola Di Mauro, ...
ARCS
2005
Springer
14 years 1 months ago
The Bio-Chemical Information Processing Metaphor as a Programming Paradigm for Organic Computing
All known life forms process information on a molecular level. This kind of chemical information processing is known to be robust, self-organizing, adaptive, decentralized, asynch...
Peter Dittrich
ICLP
2009
Springer
14 years 8 months ago
Constraint Based Languages for Biological Reactions
In this paper, we study the modelization of biochemical reaction by using concurrent constraint programming idioms. In particular we will consider the stochastic concurrent constra...
Marco Bottalico, Stefano Bistarelli