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BMCBI
2008
100views more  BMCBI 2008»
13 years 8 months ago
Extracting unrecognized gene relationships from the biomedical literature via matrix factorizations
Background: The construction of literature-based networks of gene-gene interactions is one of the most important applications of text mining in bioinformatics. Extracting potentia...
Hyunsoo Kim, Haesun Park, Barry L. Drake
IJSM
2006
90views more  IJSM 2006»
13 years 8 months ago
Diagrammatic Tools for Generating Biorthogonal Multiresolutions
In a previous work [1] we introduced a construction designed to produce biorthogonal multiresolutions from given subdivisions. This construction was formulated in matrix terms, wh...
Faramarz F. Samavati, Richard H. Bartels
WWW
2008
ACM
14 years 9 months ago
Social and semantics analysis via non-negative matrix factorization
Social media such as Web forum often have dense interactions between user and content where network models are often appropriate for analysis. Joint non-negative matrix factorizat...
Zhi-Li Wu, Chi-Wa Cheng, Chun-hung Li
IPPS
2003
IEEE
14 years 1 months ago
An Implicitly Parallel Object-Oriented Matrix Library and its Application to Medical Physics
We introduce VLADYMIR, a matrix library that permits the development of array-based code in C++. It is especially useful for numerical simulation tasks and parallelises automatical...
Jonas Lätt, Bastien Chopard
BIOCOMP
2006
13 years 9 months ago
The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks
Systems biologic studies of gene and protein interaction networks have found that these networks are comprised of `modules' (groups of tightly interconnected nodes). Module i...
Andy M. Yip, Steve Horvath