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BMCBI
2008
121views more  BMCBI 2008»
13 years 8 months ago
Modularization of biochemical networks based on classification of Petri net t-invariants
Background: Structural analysis of biochemical networks is a growing field in bioinformatics and systems biology. The availability of an increasing amount of biological data from ...
Eva Grafahrend-Belau, Falk Schreiber, Monika Heine...
TCBB
2008
137views more  TCBB 2008»
13 years 7 months ago
Toward Verified Biological Models
The last several decades have witnessed a vast accumulation of biological data and data analysis. Many of these data sets represent only a small fraction of the system's behav...
Avital Sadot, Jasmin Fisher, Dan Barak, Yishai Adm...
KDD
2009
ACM
379views Data Mining» more  KDD 2009»
14 years 11 days ago
MetaFac: community discovery via relational hypergraph factorization
This paper aims at discovering community structure in rich media social networks, through analysis of time-varying, multi-relational data. Community structure represents the laten...
Yu-Ru Lin, Jimeng Sun, Paul Castro, Ravi B. Konuru...
VLDB
1998
ACM
136views Database» more  VLDB 1998»
13 years 12 months ago
Materialized View Selection for Multidimensional Datasets
To fulfill the requirement of fast interactive multidimensional data analysis, database systems precompute aggregate views on some subsets of dimensions and their corresponding hi...
Amit Shukla, Prasad Deshpande, Jeffrey F. Naughton
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
13 years 8 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...