Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
Recent techniques increase rapidly the amount of our knowledge on interactions between proteins. The interpretation of these new information depends on our ability to retrieve kno...
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Because of the importance of proteinprotein interaction (PPI) extraction from text, many corpora have been proposed with slightly differing definitions of proteins and PPI. Since ...
Understanding what are the characteristics of proteinprotein interfaces is at the core of numerous applications. This paper introduces a method in which the proteins are described...