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» Interval-Focused Similarity Search in Time Series Databases
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KDD
2004
ACM
145views Data Mining» more  KDD 2004»
14 years 8 months ago
Mining coherent gene clusters from gene-sample-time microarray data
Extensive studies have shown that mining microarray data sets is important in bioinformatics research and biomedical applications. In this paper, we explore a novel type of genesa...
Daxin Jiang, Jian Pei, Murali Ramanathan, Chun Tan...
BMCBI
2010
123views more  BMCBI 2010»
13 years 2 months ago
Predicting conserved protein motifs with Sub-HMMs
Background: Profile HMMs (hidden Markov models) provide effective methods for modeling the conserved regions of protein families. A limitation of the resulting domain models is th...
Kevin Horan, Christian R. Shelton, Thomas Girke
SIGMOD
2009
ACM
190views Database» more  SIGMOD 2009»
14 years 8 months ago
DataLens: making a good first impression
When a database query has a large number of results, the user can only be shown one page of results at a time. One popular approach is to rank results such that the "best&quo...
Bin Liu, H. V. Jagadish
BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
EMNLP
2010
13 years 5 months ago
Handling Noisy Queries in Cross Language FAQ Retrieval
Recent times have seen a tremendous growth in mobile based data services that allow people to use Short Message Service (SMS) to access these data services. In a multilingual soci...
Danish Contractor, Govind Kothari, Tanveer A. Faru...