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BMCBI
2010
175views more  BMCBI 2010»
13 years 7 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
IPPS
2008
IEEE
14 years 1 months ago
An adaptive parallel pipeline pattern for grids
This paper introduces an adaptive parallel pipeline pattern which follows the GRASP (Grid-Adaptive Structured Parallelism) methodology. GRASP is a generic methodology to incorpora...
Horacio González-Vélez, Murray Cole
TVCG
2012
179views Hardware» more  TVCG 2012»
11 years 9 months ago
Parallel Computation of 2D Morse-Smale Complexes
—The Morse-Smale complex is a useful topological data structure for the analysis and visualization of scalar data. This paper describes an algorithm that processes all mesh eleme...
Nithin Shivashankar, Senthilnathan M, Vijay Natara...
PPOPP
2006
ACM
14 years 1 months ago
McRT-STM: a high performance software transactional memory system for a multi-core runtime
Applications need to become more concurrent to take advantage of the increased computational power provided by chip level multiprocessing. Programmers have traditionally managed t...
Bratin Saha, Ali-Reza Adl-Tabatabai, Richard L. Hu...
SIGMOD
2010
ACM
207views Database» more  SIGMOD 2010»
14 years 7 days ago
Automatic contention detection and amelioration for data-intensive operations
To take full advantage of the parallelism offered by a multicore machine, one must write parallel code. Writing parallel code is difficult. Even when one writes correct code, the...
John Cieslewicz, Kenneth A. Ross, Kyoho Satsumi, Y...