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» Invariant features for searching in protein fold databases
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IJCM
2007
58views more  IJCM 2007»
13 years 10 months ago
Invariant features for searching in protein fold databases
Maja Temerinac, Marco Reisert, Hans Burkhardt
NAR
2002
164views more  NAR 2002»
13 years 10 months ago
SCOP database in 2002: refinements accommodate structural genomics
The SCOP (Structural Classification of Proteins) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hu...
BMCBI
2006
144views more  BMCBI 2006»
13 years 11 months ago
ProFAT: a web-based tool for the functional annotation of protein sequences
Background: The functional annotation of proteins relies on published information concerning their close and remote homologues in sequence databases. Evidence for remote sequence ...
Charles Richard Bradshaw, Vineeth Surendranath, Bi...
CSB
2003
IEEE
116views Bioinformatics» more  CSB 2003»
14 years 4 months ago
Towards Index-based Similarity Search for Protein Structure Databases
We propose two methods for finding similarities in protein structure databases. Our techniques extract feature vectors on triplets of SSEs (Secondary Structure Elements) of prote...
Orhan Çamoglu, Tamer Kahveci, Ambuj K. Sing...
BMCBI
2005
159views more  BMCBI 2005»
13 years 10 months ago
Columba: an integrated database of proteins, structures, and annotations
Background: Structural and functional research often requires the computation of sets of protein structures based on certain properties of the proteins, such as sequence features,...
Silke Trißl, Kristian Rother, Heiko Mül...