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125
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BMCBI
2010
126views more  BMCBI 2010»
15 years 3 months ago
Cgaln: fast and space-efficient whole-genome alignment
Background: Whole-genome sequence alignment is an essential process for extracting valuable information about the functions, evolution, and peculiarities of genomes under investig...
Ryuichiro Nakato, Osamu Gotoh
128
Voted
BMCBI
2006
116views more  BMCBI 2006»
15 years 3 months ago
HotSwap for bioinformatics: A STRAP tutorial
Background: Bioinformatics applications are now routinely used to analyze large amounts of data. Application development often requires many cycles of optimization, compiling, and...
Christoph Gille, Peter N. Robinson
117
Voted
IJCGA
2000
64views more  IJCGA 2000»
15 years 3 months ago
High Fidelity Interval Assignment
Quadrilateral meshing algorithms impose certain constraints on the number of intervals or mesh edges of the curves bounding a surface. When constructing a conformal mesh of a colle...
Scott A. Mitchell
144
Voted
ASPLOS
2012
ACM
13 years 11 months ago
Chameleon: operating system support for dynamic processors
The rise of multi-core processors has shifted performance efforts towards parallel programs. However, single-threaded code, whether from legacy programs or ones difficult to para...
Sankaralingam Panneerselvam, Michael M. Swift
166
Voted
BMCBI
2004
156views more  BMCBI 2004»
15 years 3 months ago
DIALIGN P: Fast pair-wise and multiple sequence alignment using parallel processors
Background: Parallel computing is frequently used to speed up computationally expensive tasks in Bioinformatics. Results: Herein, a parallel version of the multi-alignment program...
Martin Schmollinger, Kay Nieselt, Michael Kaufmann...