Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
d abstract), Nicola Ferraro, Luigi Palopoli, Simona Panni and Simona E. Rombo. Uncovering Hidden Phylogenetic Consensus d abstract), Nicholas Pattengale, Krister Swenson and Bernar...
Nicola Ferraro, Luigi Palopoli, Simona Panni, Simo...
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...