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NAR
2007
128views more  NAR 2007»
13 years 8 months ago
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
BIOCOMP
2009
13 years 9 months ago
Analysis of Long Branch Extraction
Long branch attraction is a problem that afflicts phylogenetic methods and a procedure to detect a data set suffering from this problem is the long branch extraction method[1]. Thi...
Timothy O'Connor, Kenneth Sundberg, Hyrum Carroll,...
BIOINFORMATICS
2005
85views more  BIOINFORMATICS 2005»
13 years 8 months ago
An automated genotyping system for analysis of HIV-1 and other microbial sequences
Motivation: Genetic analysis of HIV-1 is important not only for vaccine development, but also to guide treatment strategies, track the emergence of new viral variants and ensure t...
Tulio de Oliveira, Koen Deforche, Sharon Cassol, M...
BIRD
2008
Springer
159views Bioinformatics» more  BIRD 2008»
13 years 10 months ago
Exploration of Evolutionary Relations between Protein Structures
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
Natalja Kurbatova, Juris Viksna
NAR
2007
153views more  NAR 2007»
13 years 8 months ago
PROMALS web server for accurate multiple protein sequence alignments
Multiple sequence alignments are essential in homology inference, structure modeling, functional prediction and phylogenetic analysis. We developed a web server that constructs mu...
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grish...