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BMCBI
2011
12 years 11 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
ACL
2004
13 years 8 months ago
Error Mining for Wide-Coverage Grammar Engineering
Parsing systems which rely on hand-coded linguistic descriptions can only perform adequately in as far as these descriptions are correct and complete. The paper describes an error...
Gertjan van Noord
IIS
2004
13 years 8 months ago
Lingo: Search Results Clustering Algorithm Based on Singular Value Decomposition
Search results clustering problem is defined as an automatic, on-line grouping of similar documents in a search results list returned from a search engine. In this paper we present...
Stanislaw Osinski, Jerzy Stefanowski, Dawid Weiss
DCC
2004
IEEE
14 years 7 months ago
An Approximation to the Greedy Algorithm for Differential Compression of Very Large Files
We present a new differential compression algorithm that combines the hash value techniques and suffix array techniques of previous work. Differential compression refers to encodi...
Ramesh C. Agarwal, Suchitra Amalapurapu, Shaili Ja...
BMCBI
2008
128views more  BMCBI 2008»
13 years 7 months ago
Efficient computation of absent words in genomic sequences
Background: Analysis of sequence composition is a routine task in genome research. Organisms are characterized by their base composition, dinucleotide relative abundance, codon us...
Julia Herold, Stefan Kurtz, Robert Giegerich