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ARC
2007
Springer
123views Hardware» more  ARC 2007»
13 years 11 months ago
Multiple Sequence Alignment Using Reconfigurable Computing
The alignment of multiple protein (or DNA) sequences is a current problem in Bioinformatics. ClustalW is the most popular heuristic algorithm for multiple sequence alignment. Pairw...
Carlos R. Erig Lima, Heitor S. Lopes, Maiko R. Mor...
ICASSP
2007
IEEE
14 years 1 months ago
Fast Search of Sequences with Complex Symbol Correlations using Profile Context-Sensitive HMMS and Pre-Screening Filters
Recently, profile context-sensitive HMMs (profile-csHMMs) have been proposed which are very effective in modeling the common patterns and motifs in related symbol sequences. Pro...
Byung-Jun Yoon, P. P. Vaidyanathan
BMCBI
2011
12 years 11 months ago
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation
Background: The implementation of high throughput sequencing for exploring biodiversity poses high demands on bioinformatics applications for automated data processing. Here we in...
Surendra Kumar, Tor Carlsen, Bjørn-Helge Me...
HIPC
2009
Springer
13 years 5 months ago
Detailed analysis of I/O traces for large scale applications
- In this paper, we present a tool to extract I/O traces from very large applications running at full scale during their production runs. We analyze these traces to gain informatio...
Nithin Nakka, Alok N. Choudhary, Wei-keng Liao, Le...
EUROSSC
2008
Springer
13 years 9 months ago
Gaussian Process Person Identifier Based on Simple Floor Sensors
Abstract. This paper describes methods and sensor technology used to identify persons from their walking characteristics. We use an array of simple binary switch floor sensors to d...
Jaakko Suutala, Kaori Fujinami, Juha Röning