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» Large Scale Simulation of Parallel Molecular Dynamics
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CPHYSICS
2007
96views more  CPHYSICS 2007»
13 years 7 months ago
Simple models for biomembrane structure and dynamics
Simulation of biomembranes over length and time scales relevant to cellular biology is not currently feasible with molecular dynamics including full atomic detail. Barring an unfo...
Frank L. H. Brown
ICNP
2005
IEEE
14 years 1 months ago
On Static and Dynamic Partitioning Behavior of Large-Scale Networks
In this paper, we analyze the problem of network disconnection in the context of large-scale P2P networks and understand how both static and dynamic patterns of node failure affec...
Derek Leonard, Zhongmei Yao, Xiaoming Wang, Dmitri...
EDCC
2008
Springer
13 years 9 months ago
SONDe, a Self-Organizing Object Deployment Algorithm in Large-Scale Dynamic Systems
We present the design, correctness, and analysis of SONDe, a simple fully decentralized object deployment algorithm for highly requested systems. Given an object (service or data)...
Vincent Gramoli, Anne-Marie Kermarrec, Erwan Le Me...
JCC
2007
121views more  JCC 2007»
13 years 7 months ago
Speeding up parallel GROMACS on high-latency networks
: We investigate the parallel scaling of the GROMACS molecular dynamics code on Ethernet Beowulf clusters and what prerequisites are necessary for decent scaling even on such clust...
Carsten Kutzner, David van der Spoel, Martin Fechn...
HPDC
2006
IEEE
14 years 2 months ago
Effective Prediction of Job Processing Times in a Large-Scale Grid Environment
Grid applications that use a considerable number of processors for their computations need effective predictions of the expected computation times on the different nodes. Currentl...
Menno Dobber, Robert D. van der Mei, Ger Koole