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» Large Scale Simulation of Parallel Molecular Dynamics
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PDCAT
2004
Springer
14 years 2 months ago
Parallel Computing Platform for the Agent-Based Modeling of Multicellular Biological Systems
Abstract. Agent-based simulation of large multicellular biological systems has become a viable option owing to affordable parallel computers, such as Beowulf-style clusters. We de...
Toh Da-Jun, Francis Tang, Travis Lee, Deepak Sarda...
ISCA
2002
IEEE
80views Hardware» more  ISCA 2002»
14 years 2 months ago
A Large, Fast Instruction Window for Tolerating Cache Misses
Instruction window size is an important design parameter for many modern processors. Large instruction windows offer the potential advantage of exposing large amounts of instructi...
Alvin R. Lebeck, Tong Li, Eric Rotenberg, Jinson K...
BMCBI
2010
149views more  BMCBI 2010»
13 years 9 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
IM
2007
13 years 9 months ago
A Service Middleware that Scales in System Size and Applications
We present a peer-to-peer service management middleware that dynamically allocates system resources to a large set of applications. The system achieves scalability in number of no...
Constantin Adam, Rolf Stadler, Chunqiang Tang, Mal...
AFRIGRAPH
2010
ACM
14 years 1 months ago
Dynamic load balancing of Lattice Boltzmann free-surface fluid animations
We investigate the use of dynamic load balancing for more efficient parallel Lattice Boltzmann Method (LBM) Free Surface simulations. Our aim is to produce highly detailed fluid ...
Ashley Reid, James E. Gain, Michelle Kuttel