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» Large Scale Simulation of Parallel Molecular Dynamics
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HPCS
2007
IEEE
14 years 2 months ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu
HPDC
2005
IEEE
14 years 1 months ago
Generosity and gluttony in GEMS: grid enabled molecular simulations
Biomolecular simulations produce more output data than can be managed effectively by traditional computing systems. Researchers need distributed systems that allow the pooling of...
Justin M. Wozniak, Paul Brenner, Douglas Thain, Aa...
LSSC
2007
Springer
14 years 2 months ago
Parallel Implementation of LQG Balanced Truncation for Large-Scale Systems
Model reduction of large-scale linear time-invariant systems is an ubiquitous task in control and simulation of complex dynamical processes. We discuss how LQG balanced truncation ...
José M. Badía, Peter Benner, Rafael ...
ICCS
2005
Springer
14 years 1 months ago
Self-optimization of Large Scale Wildfire Simulations
The development of efficient parallel algorithms for large scale wildfire simulations is a challenging research problem because the factors that determine wildfire behavior are com...
Jingmei Yang, Huoping Chen, Salim Hariri, Manish P...
IPPS
2007
IEEE
14 years 2 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...