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» Large scale hierarchical clustering of protein sequences
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BMCBI
2008
143views more  BMCBI 2008»
13 years 10 months ago
Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering
Background: The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, ...
Shibu Yooseph, Weizhong Li, Granger G. Sutton
SIAMSC
2008
182views more  SIAMSC 2008»
13 years 9 months ago
A Distributed SDP Approach for Large-Scale Noisy Anchor-Free Graph Realization with Applications to Molecular Conformation
We propose a distributed algorithm for solving Euclidean metric realization problems arising from large 3D graphs, using only noisy distance information, and without any prior kno...
Pratik Biswas, Kim-Chuan Toh, Yinyu Ye
GCB
1997
Springer
77views Biometrics» more  GCB 1997»
14 years 1 months ago
Statistics of large scale sequence searching
Motivation: Database search programs such as FASTA, BLAST or a rigorous Smith–Waterman algorithm produce lists of database entries, which are assumed to be related to the query....
Rainer Spang, Martin Vingron
CBMS
2009
IEEE
14 years 4 months ago
On the storage, management and analysis of (multi) similarity for large scale protein structure datasets in the grid
Assessment of the (Multi) Similarity among a set of protein structures is achieved through an ensemble of protein structure comparison methods/algorithms. This leads to the genera...
Gianluigi Folino, Azhar Ali Shah, Natalio Krasnogo...
ECRTS
2007
IEEE
14 years 4 months ago
A Hybrid Real-Time Scheduling Approach for Large-Scale Multicore Platforms
We propose a hybrid approach for scheduling real-time tasks on large-scale multicore platforms with hierarchical shared caches. In this approach, a multicore platform is partition...
John M. Calandrino, James H. Anderson, Dan P. Baum...