Sciweavers

403 search results - page 11 / 81
» Large scale sequencing by hybridization
Sort
View
CIKM
2009
Springer
13 years 11 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
IPPS
2005
IEEE
14 years 1 months ago
High-Performance Direct Pairwise Comparison of Large Genomic Sequences
Many applications in Comparative Genomics lend themselves to implementations that take advantage of common high-performance features in modern microprocessors. However, the common...
Christopher Mueller, Mehmet M. Dalkilic, Andrew Lu...
WABI
2009
Springer
181views Bioinformatics» more  WABI 2009»
14 years 2 months ago
Decoding Synteny Blocks and Large-Scale Duplications in Mammalian and Plant Genomes
Abstract. The existing synteny block reconstruction algorithms use anchors (e.g., orthologous genes) shared over all genomes to construct the synteny blocks for multiple genomes. T...
Qian Peng, Max A. Alekseyev, Glenn Tesler, Pavel A...
CCE
2006
13 years 7 months ago
An efficient algorithm for large scale stochastic nonlinear programming problems
The class of stochastic nonlinear programming (SNLP) problems is important in optimization due to the presence of nonlinearity and uncertainty in many applications, including thos...
Y. Shastri, Urmila M. Diwekar
ACL
2010
13 years 5 months ago
Practical Very Large Scale CRFs
Conditional Random Fields (CRFs) are a widely-used approach for supervised sequence labelling, notably due to their ability to handle large description spaces and to integrate str...
Thomas Lavergne, Olivier Cappé, Franç...