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» Large scale sequencing by hybridization
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ISMB
1998
13 years 8 months ago
Computational Applications of DNA Structural Scales
We study from a computational standpoint several different physicalscales associatedwith structural features of DNA sequences, including dinucleotide scales such as base stacking ...
Pierre Baldi, Søren Brunak, Yves Chauvin, A...
PPOPP
2005
ACM
14 years 1 months ago
Scaling model checking of dataraces using dynamic information
Dataraces in multithreaded programs often indicate severe bugs and can cause unexpected behaviors when different thread interleavings are executed. Because dataraces are a cause f...
Ohad Shacham, Mooly Sagiv, Assaf Schuster
ICIP
2008
IEEE
14 years 9 months ago
Tracking through changes in scale
We propose a tracking system that is especially well-suited to tracking targets which change drastically in size or appearance. To accomplish this, we employ a fast, two phase tem...
Allen Tannenbaum, Arie Nakhmani, James G. Malcolm,...
BMCBI
2010
175views more  BMCBI 2010»
13 years 7 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
IPPS
2009
IEEE
14 years 2 months ago
A metascalable computing framework for large spatiotemporal-scale atomistic simulations
A metascalable (or “design once, scale on new architectures”) parallel computing framework has been developed for large spatiotemporal-scale atomistic simulations of materials...
Ken-ichi Nomura, Richard Seymour, Weiqiang Wang, H...