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» Large scale sequencing by hybridization
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ECML
2006
Springer
14 years 14 days ago
Deconvolutive Clustering of Markov States
In this paper we formulate the problem of grouping the states of a discrete Markov chain of arbitrary order simultaneously with deconvolving its transition probabilities. As the na...
Ata Kabán, Xin Wang
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 8 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
BMCBI
2006
111views more  BMCBI 2006»
13 years 8 months ago
High throughput profile-profile based fold recognition for the entire human proteome
Background: In order to maintain the most comprehensive structural annotation databases we must carry out regular updates for each proteome using the latest profile-profile fold r...
Liam J. McGuffin, Richard T. Smith, Kevin Bryson, ...
GISCIENCE
2004
Springer
130views GIS» more  GISCIENCE 2004»
14 years 2 months ago
Comparing Exact and Approximate Spatial Auto-regression Model Solutions for Spatial Data Analysis
The spatial auto-regression (SAR) model is a popular spatial data analysis technique, which has been used in many applications with geo-spatial datasets. However, exact solutions f...
Baris M. Kazar, Shashi Shekhar, David J. Lilja, Ra...
BMCBI
2005
163views more  BMCBI 2005»
13 years 8 months ago
CoaSim: A flexible environment for simulating genetic data under coalescent models
Background: Coalescent simulations are playing a large role in interpreting large scale intraspecific sequence or polymorphism surveys and for planning and evaluating association ...
Thomas Mailund, Mikkel H. Schierup, Christian N. S...