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» Large scale sequencing by hybridization
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ICML
2005
IEEE
14 years 8 months ago
Large scale genomic sequence SVM classifiers
In genomic sequence analysis tasks like splice site recognition or promoter identification, large amounts of training sequences are available, and indeed needed to achieve suffici...
Bernhard Schölkopf, Gunnar Rätsch, S&oum...
JPDC
2006
112views more  JPDC 2006»
13 years 7 months ago
Large scale multiple sequence alignment with simultaneous phylogeny inference
Multiple sequence alignment (MSA) and phylogenetic tree reconstruction are one of the most important problems in the computational biology. While both these problems are of great ...
Gilles Parmentier, Denis Trystram, Jaroslaw Zola
PADL
2009
Springer
14 years 8 months ago
Using Bloom Filters for Large Scale Gene Sequence Analysis in Haskell
Analysis of biological data often involves large data sets and computationally expensive algorithms. Databases of biological data continue to grow, leading to an increasing demand ...
Ketil Malde, Bryan O'Sullivan
GCB
1997
Springer
77views Biometrics» more  GCB 1997»
13 years 11 months ago
Statistics of large scale sequence searching
Motivation: Database search programs such as FASTA, BLAST or a rigorous Smith–Waterman algorithm produce lists of database entries, which are assumed to be related to the query....
Rainer Spang, Martin Vingron