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» Large scale sequencing by hybridization
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2009
ACM
14 years 3 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
BMCBI
2010
135views more  BMCBI 2010»
13 years 9 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
IPPS
2006
IEEE
14 years 2 months ago
A study of MPI performance analysis tools on Blue Gene/L
Applications on todays massively parallel supercomputers rely on performance analysis tools to guide them toward scalable performance on thousands of processors. However, conventi...
I-Hsin Chung, Robert Walkup, Hui-Fang Wen, Hao Yu
IJAIT
2008
99views more  IJAIT 2008»
13 years 8 months ago
Optimal Basic Block Instruction Scheduling for Multiple-Issue Processors Using Constraint Programming
Instruction scheduling is one of the most important steps for improving the performance of object code produced by a compiler. A fundamental problem that arises in instruction sch...
Abid M. Malik, Jim McInnes, Peter van Beek
SECON
2008
IEEE
14 years 3 months ago
SYNAPSE: A Network Reprogramming Protocol for Wireless Sensor Networks Using Fountain Codes
—Wireless reprogramming is a key functionality in Wireless Sensor Networks (WSNs). In fact, the requirements for the network may change in time, or new parameters might have to b...
Michele Rossi, Giovanni Zanca, Luca Stabellini, Ri...