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ALGORITHMICA
2007
70views more  ALGORITHMICA 2007»
13 years 10 months ago
Sampling Conformation Space to Model Equilibrium Fluctuations in Proteins
This paper proposes the Protein Ensemble Method (PEM) to model equilibrium fluctuations in proteins where fragments of the protein polypeptide chain can move independently of one ...
Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki
BMCBI
2005
92views more  BMCBI 2005»
13 years 9 months ago
A decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators
Background: Estimators of free energies are routinely used to judge the quality of protein structural models. As these estimators still present inaccuracies, they are frequently e...
Federico Fogolari, Silvio C. E. Tosatto, Giorgio C...
JMLR
2010
165views more  JMLR 2010»
13 years 4 months ago
Learning with Blocks: Composite Likelihood and Contrastive Divergence
Composite likelihood methods provide a wide spectrum of computationally efficient techniques for statistical tasks such as parameter estimation and model selection. In this paper,...
Arthur Asuncion, Qiang Liu, Alexander T. Ihler, Pa...
ICIP
2005
IEEE
14 years 11 months ago
Bounding box splitting for robust shape classification
This paper presents a fast method to compute homeomorphisms between 2D lattices and shapes found in binary images. Unlike many other methods, this mapping is not restricted to sim...
Christian Bauckhage, John K. Tsotsos
COMPSAC
2003
IEEE
14 years 3 months ago
A Cut-Based Algorithm for Reliability Analysis of Terminal-Pair Network Using OBDD
In this paper, we propose an algorithm to construct the Ordered Binary Decision Diagram (OBDD) representing the cut function of a terminal-pair network. The algorithm recognizes i...
Yung-Ruei Chang, Hung-Yau Lin, Ing-Yi Chen, Sy-Yen...