This paper proposes the Protein Ensemble Method (PEM) to model equilibrium fluctuations in proteins where fragments of the protein polypeptide chain can move independently of one ...
Background: Estimators of free energies are routinely used to judge the quality of protein structural models. As these estimators still present inaccuracies, they are frequently e...
Federico Fogolari, Silvio C. E. Tosatto, Giorgio C...
Composite likelihood methods provide a wide spectrum of computationally efficient techniques for statistical tasks such as parameter estimation and model selection. In this paper,...
Arthur Asuncion, Qiang Liu, Alexander T. Ihler, Pa...
This paper presents a fast method to compute homeomorphisms between 2D lattices and shapes found in binary images. Unlike many other methods, this mapping is not restricted to sim...
In this paper, we propose an algorithm to construct the Ordered Binary Decision Diagram (OBDD) representing the cut function of a terminal-pair network. The algorithm recognizes i...