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NAR
2002
141views more  NAR 2002»
13 years 7 months ago
Co-expression pattern from DNA microarray experiments as a tool for operon prediction
The prediction of operons, the smallest unit of transcription in prokaryotes, is the first step towards reconstruction of a regulatory network at the whole genome level. Sequence ...
Chiara Sabatti, Lars Rohlin, Min-Kyu Oh, James C. ...
PE
2010
Springer
140views Optimization» more  PE 2010»
13 years 5 months ago
KPC-Toolbox: Best recipes for automatic trace fitting using Markovian Arrival Processes
We present the KPC-Toolbox, a library of MATLAB scripts for fitting workload traces into Markovian Arrival Processes (MAPs) in an automatic way based on the recently proposed Kro...
Giuliano Casale, Eddy Z. Zhang, Evgenia Smirni
RECOMB
2010
Springer
13 years 5 months ago
Predicting Nucleosome Positioning Using Multiple Evidence Tracks
Abstract. We describe a probabilistic model, implemented as a dynamic Bayesian network, that can be used to predict nucleosome positioning along a chromosome based on one or more g...
Sheila M. Reynolds, Zhiping Weng, Jeff A. Bilmes, ...
PAMI
2011
13 years 2 months ago
Greedy Learning of Binary Latent Trees
—Inferring latent structures from observations helps to model and possibly also understand underlying data generating processes. A rich class of latent structures are the latent ...
Stefan Harmeling, Christopher K. I. Williams
TASLP
2011
13 years 2 months ago
A Generative Student Model for Scoring Word Reading Skills
—This paper presents a novel student model intended to automate word-list-based reading assessments in a classroom setting, specifically for a student population that includes b...
Joseph Tepperman, Sungbok Lee, Shrikanth Narayanan...