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GCB
2004
Springer
223views Biometrics» more  GCB 2004»
13 years 12 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
DMIN
2006
141views Data Mining» more  DMIN 2006»
13 years 9 months ago
Extracting Forensic Explanation from Intrusion Alerts
Since it is desirable for an intrusion detection system to be operated with the real time performance, it is not unusual for an intrusion detection engine to perform a "lazy ...
Bon Sy, Negmat Mullodzhanov
BMCBI
2006
129views more  BMCBI 2006»
13 years 8 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
COMPUTER
2006
98views more  COMPUTER 2006»
13 years 8 months ago
Componentization: The Visitor Example
: In software design, laziness is a virtue: it's better to reuse than to redo. Design patterns are a good illustration. Patterns, a major advance in software architecture, pro...
Bertrand Meyer, Karine Arnout
ITA
2007
153views Communications» more  ITA 2007»
13 years 8 months ago
Deciding inclusion of set constants over infinite non-strict data structures
Abstract. Various static analyses of functional programming languages that permit infinite data structures make use of set constants like Top, Inf, and Bot, denoting all terms, al...
Manfred Schmidt-Schauß, David Sabel, Marko S...