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BMCBI
2011
13 years 17 days ago
Reconstructing genome-wide regulatory network of E. coli using transcriptome data and predicted transcription factor activities
Background: Gene regulatory networks play essential roles in living organisms to control growth, keep internal metabolism running and respond to external environmental changes. Un...
Yao Fu, Laura R. Jarboe, Julie A. Dickerson
BMCBI
2011
13 years 4 months ago
The dChip survival analysis module for microarray data
Background: Genome-wide expression signatures are emerging as potential marker for overall survival and disease recurrence risk as evidenced by recent commercialization of gene ex...
Samir B. Amin, Parantu K. Shah, Aimin Yan, Sophia ...
BIBM
2007
IEEE
137views Bioinformatics» more  BIBM 2007»
14 years 3 months ago
A Multi-metric Similarity Based Analysis of Microarray Data
Clustering has been shown to be effective in analyzing functional relationships of genes. However, no single clustering method with single distance metric is capable of capturing ...
Fatih Altiparmak, Selnur Erdal, Ozgur Ozturk, Haka...
CVPR
2010
IEEE
14 years 4 months ago
Efficient Piecewise Learning for Conditional Random Fields
Conditional Random Field models have proved effective for several low-level computer vision problems. Inference in these models involves solving a combinatorial optimization probl...
Karteek Alahari, Phil Torr
AAAI
2008
13 years 11 months ago
Adaptive Treatment of Epilepsy via Batch-mode Reinforcement Learning
This paper highlights the crucial role that modern machine learning techniques can play in the optimization of treatment strategies for patients with chronic disorders. In particu...
Arthur Guez, Robert D. Vincent, Massimo Avoli, Joe...