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CANDC
2006
ACM
13 years 10 months ago
Identification of functional modules in a PPI network by clique percolation clustering
Large-scale experiments and data integration have provided the opportunity to systematically analyze and comprehensively understand the topology of biological networks and biochem...
Shi-Hua Zhang, Xue-Mei Ning, Xiang-Sun Zhang
BIBE
2010
IEEE
135views Bioinformatics» more  BIBE 2010»
13 years 10 months ago
Finding Dynamic Modules of Biological Regulatory Networks
—Often groups of genes in regulatory networks, also called modules, work collaboratively on similar functions. Mathematically, the modules in a regulatory network has often been ...
Ferhat Ay, Thang N. Dinh, My T. Thai, Tamer Kahvec...
FLAIRS
2009
13 years 7 months ago
Constraint-based Approach to Discovery of Inter Module Dependencies in Modular Bayesian Networks
This paper introduces an information theoretic approach to verification of modular causal probabilistic models. We assume systems which are gradually extended by adding new functi...
Patrick de Oude, Gregor Pavlin
BMCBI
2011
13 years 1 months ago
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Background: Combining multiple evidence-types from different information sources has the potential to reveal new relationships in biological systems. The integrated information ca...
Artem Lysenko, Michael Defoin-Platel, Keywan Hassa...
BMCBI
2011
13 years 1 months ago
MINE: Module Identification in NEtworks
Background: Graphical models of network associations are useful for both visualizing and integrating multiple types of association data. Identifying modules, or groups of function...
Kahn Rhrissorrakrai, Kristin C. Gunsalus