— This paper describes graph-based relational, unsupervised learning algorithm to infer node replacement graph grammar and its application to metabolic pathways. We search for fr...
Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder...
Graph grammars combine the relational aspect of graphs with the iterative and recursive aspects of string grammars, and thus represent an important next step in our ability to dis...
Jacek P. Kukluk, Lawrence B. Holder, Diane J. Cook
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...