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BMCBI
2005
134views more  BMCBI 2005»
13 years 8 months ago
Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST)
Background: BLAST is one of the most common and useful tools for Genetic Research. This paper describes a software application we have termed Windows .NET Distributed Basic Local ...
Scot E. Dowd, Joaquin Zaragoza, Javier R. Rodrigue...
BMCBI
2008
87views more  BMCBI 2008»
13 years 9 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
ISMB
2000
13 years 10 months ago
Search for a New Description of Protein Topology and Local Structure
A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
Lukasz Jaroszewski, Adam Godzik
ATVA
2004
Springer
77views Hardware» more  ATVA 2004»
14 years 2 months ago
Localizing Errors in Counterexample with Iteratively Witness Searching
We propose a novel approach to locate errors in complex counterexample of safety property. Our approach measures the distance between two state transition traces with difference o...
ShengYu Shen, Ying Qin, Sikun Li
AAAI
2006
13 years 10 months ago
Local-Search Techniques for Boolean Combinations of Pseudo-Boolean Constraints
Some search problems are most directly specified by boolean combinations of pseudo-boolean constraints. We study a logic PL(PB) whose formulas are of this form, and design local-s...
Lengning Liu, Miroslaw Truszczynski