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BMCBI
2010
125views more  BMCBI 2010»
13 years 10 months ago
Large-scale prediction of protein-protein interactions from structures
Background: The prediction of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms insid...
Martial Hue, Michael Riffle, Jean-Philippe Vert, W...
BMCBI
2008
164views more  BMCBI 2008»
13 years 10 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
BMCBI
2005
117views more  BMCBI 2005»
13 years 9 months ago
An SVM-based system for predicting protein subnuclear localizations
Background: The large gap between the number of protein sequences in databases and the number of functionally characterized proteins calls for the development of a fast computatio...
Zhengdeng Lei, Yang Dai
PVLDB
2008
128views more  PVLDB 2008»
13 years 9 months ago
Implementing filesystems by tree-aware DBMSs
With the rise of XML, the database community has been challenged by semi-structured data processing. Since the data type behind XML is the tree, state-of-the-art RDBMSs have learn...
Alexander Holupirek, Marc H. Scholl
BMCBI
2011
13 years 4 months ago
NClassG+: A classifier for non-classically secreted Gram-positive bacterial proteins
Background: Most predictive methods currently available for the identification of protein secretion mechanisms have focused on classically secreted proteins. In fact, only two met...
Daniel Restrepo-Montoya, Camilo Pino, Luis F. Ni&n...