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BMCBI
2008
86views more  BMCBI 2008»
13 years 8 months ago
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Ernesto Picardi, Carla Quagliariello
BMCBI
2006
137views more  BMCBI 2006»
13 years 8 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
VLDB
2008
ACM
110views Database» more  VLDB 2008»
14 years 9 months ago
Enhancing histograms by tree-like bucket indices
Histograms are used to summarize the contents of relations into a number of buckets for the estimation of query result sizes. Several techniques (e.g., MaxDiff and V-Optimal) have ...
Francesco Buccafurri, Gianluca Lax, Domenico SaccÃ...
CSR
2006
Springer
14 years 12 days ago
Fast Motif Search in Protein Sequence Databases
Regular expression pattern matching is widely used in computational biology. Searching through a database of sequences for a motif (a simple regular expression), or its variations...
Elena Zheleva, Abdullah N. Arslan
EOR
2007
104views more  EOR 2007»
13 years 8 months ago
A cutting-plane approach for the two-dimensional orthogonal non-guillotine cutting problem
The two-dimensional orthogonal non-guillotine cutting problem (NGCP) appears in many industries (like wood and steel industries) and consists in cutting a rectangular master surfa...
Roberto Baldacci, Marco A. Boschetti