Increasingly large-scale clusters of PC/WS continue to become majority platform in HPC field. Such a commodity cluster environment, there may be incremental upgrade due to severa...
Irregular and dynamic parallel applications pose significant challenges to achieving scalable performance on large-scale multicore clusters. These applications often require ongo...
James Dinan, D. Brian Larkins, P. Sadayappan, Srir...
Our goal is to develop a robust out-of-core sorting program for a distributed-memory cluster. The literature contains two dominant paradigms for out-of-core sorting algorithms: me...
Lattice-Boltzmann (LB) methods are a well-known technique in the context of computational fluid dynamics. By nature, they can easily be parallelized but their adaptation to the Gr...
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...