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» Local Pattern Mining from Sequences Using Rough Set Theory
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BMCBI
2006
127views more  BMCBI 2006»
13 years 7 months ago
Using local gene expression similarities to discover regulatory binding site modules
Background: We present an approach designed to identify gene regulation patterns using sequence and expression data collected for Saccharomyces cerevisae. Our main goal is to rela...
Bartek Wilczynski, Torgeir R. Hvidsten, Andriy Kry...
DAGSTUHL
2004
13 years 9 months ago
Knowledge-Based Sampling for Subgroup Discovery
Subgroup discovery aims at finding interesting subsets of a classified example set that deviates from the overall distribution. The search is guided by a so-called utility function...
Martin Scholz
KDD
2002
ACM
154views Data Mining» more  KDD 2002»
14 years 8 months ago
Mining Protein Contact Maps
The 3D conformation of a protein may be compactly represented in a symmetrical, square, boolean matrix of pairwise, inter-residue contacts, or "contact map". The contact...
Jingjing Hu, Xiaolan Shen, Yu Shao, Chris Bystroff...
PKDD
2009
Springer
134views Data Mining» more  PKDD 2009»
14 years 2 months ago
Mining Graph Evolution Rules
In this paper we introduce graph-evolution rules, a novel type of frequency-based pattern that describe the evolution of large networks over time, at a local level. Given a sequenc...
Michele Berlingerio, Francesco Bonchi, Björn ...
ISMB
2000
13 years 9 months ago
Pattern Recognition of Genomic Features with Microarrays: Site Typing of Mycobacterium Tuberculosis Strains
Mycobacterium tuberculosis (M. tb.) strains differ in the number and locations of a transposon-like insertion sequence known as IS6110. Accurate detection of this sequence can be ...
Soumya Raychaudhuri, Joshua M. Stuart, Xuemin Liu,...