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» Local Similarity in RNA Secondary Structures
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JCB
2007
108views more  JCB 2007»
13 years 7 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
NAR
1998
129views more  NAR 1998»
13 years 7 months ago
The guide RNA database
The RNA editing process in protozoan parasites is controlled by small RNA molecules known as guide RNAs (gRNAs). The gRNA database is a comprehensive compilation of published guid...
Augustine E. Souza, H. Ulrich Göringer
BIOCOMP
2009
13 years 8 months ago
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
Denise Y. F. Mak, Gary Benson
JGAA
2006
69views more  JGAA 2006»
13 years 7 months ago
Efficient drawing of RNA secondary structure
In this paper, we propose a new layout algorithm that draws the secondary structure of a Ribonucleic Acid (RNA) automatically according to some of the biologists' aesthetic c...
David Auber, Maylis Delest, Jean-Philippe Domenger...
SPE
2008
91views more  SPE 2008»
13 years 7 months ago
A multiple layer model to compare RNA secondary structures
composed of various graphs linked together by relations of abstraction/refinement. The new structure is useful for representing information that can be described at t levels of abs...
Julien Allali, Marie-France Sagot