50 search results - page 7 / 10 » Local Similarity in RNA Secondary Structures |
WALCOM
2010
IEEE
14 years 2 months ago
2010
IEEE
Abstract. Arc-annotated sequences are useful for representing structural information of RNAs and have been extensively used for comparing RNA structures in both terms of sequence a...
IPPS
2009
IEEE
14 years 2 months ago
2009
IEEE
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
BMCBI
2008
13 years 7 months ago
2008
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
GCB
2005
Springer
14 years 1 months ago
2005
Springer
We present an extension of the standard partition function approach to RNA secondary structures that computes the probabilities Pu[i, j] that a sequence interval [i, j] is unpaired...
ISMB
1997
13 years 9 months ago
1997
The structural comparison of proteins has become increasingly important as a means to identify protein motifs and fold families. In this paper we present a new algorithm for the c...