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RECOMB
2005
Springer
14 years 8 months ago
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
Abstract. Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e. segmenta...
Yan Liu, Jaime G. Carbonell, Peter Weigele, Vanath...
ACCV
2009
Springer
14 years 2 months ago
Lorentzian Discriminant Projection and Its Applications
This paper develops a supervised dimensionality reduction method, Lorentzian Discriminant Projection (LDP), for discriminant analysis and classification. Our method represents the...
Risheng Liu, Zhixun Su, Zhouchen Lin, Xiaoyu Hou
BIBM
2008
IEEE
172views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Boosting Methods for Protein Fold Recognition: An Empirical Comparison
Protein fold recognition is the prediction of protein’s tertiary structure (Fold) given the protein’s sequence without relying on sequence similarity. Using machine learning t...
Yazhene Krishnaraj, Chandan K. Reddy
COMPSAC
2004
IEEE
13 years 11 months ago
Protein Functional Motion Query and Visualization
Function is a dynamic property closely related to the conformational mechanisms of the protein structure in its physiological environment. Efficient methods and tools for predicti...
Xiong Liu, Hassan A. Karimi, Lee-Wei Yang, Ivet Ba...
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
14 years 2 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...