27 search results - page 4 / 6 » Locality and Gaps in RNA Comparison |
BMCBI
2006
13 years 7 months ago
2006
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
BMCBI
2005
13 years 7 months ago
2005
Background: Probabilistic models for sequence comparison (such as hidden Markov models and pair hidden Markov models for proteins and mRNAs, or their context-free grammar counterp...
BMCBI
2010
13 years 7 months ago
2010
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...
SIAMAM
2000
13 years 7 months ago
2000
We study propagation failure using the one-dimensional scalar bistable equation with a passive "gap" region. By applying comparison principles for this type of equation, ...
BMCBI
2008
13 years 7 months ago
2008
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...