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BIBM
2009
IEEE
118views Bioinformatics» more  BIBM 2009»
13 years 11 months ago
Inexact Local Alignment Search over Suffix Arrays
We describe an algorithm for finding approximate seeds for DNA homology searches. In contrast to previous algorithms that use exact or spaced seeds, our approximate seeds may conta...
Mohammadreza Ghodsi, Mihai Pop
IJCV
2008
88views more  IJCV 2008»
13 years 7 months ago
On the Local Behavior of Spaces of Natural Images
In this study we concentrate on qualitative topological analysis of the local behavior of the space of natural images. To this end, we use a space of 3 by 3 high-contrast patches ...
Gunnar Carlsson, Tigran Ishkhanov, Vin de Silva, A...
ICPR
2008
IEEE
14 years 2 months ago
Linear time recognition algorithms for topological invariants in 3D
In this paper, we design linear time algorithms to recognize and determine topological invariants such as genus and homology groups in 3D. These invariants can be used to identify...
Li Chen, Yongwu Rong
SODA
2008
ACM
118views Algorithms» more  SODA 2008»
13 years 9 months ago
Geodesic Delaunay triangulation and witness complex in the plane
We introduce a new feature size for bounded domains in the plane endowed with an intrinsic metric. Given a point x in a domain X, the homotopy feature size of X at x measures half...
Jie Gao, Leonidas J. Guibas, Steve Oudot, Yue Wang
IPMI
2009
Springer
14 years 8 months ago
Persistence Diagrams of Cortical Surface Data
We present a novel framework for characterizing signals in images using techniques from computational algebraic topology. This technique is general enough for dealing with noisy mu...
Moo K. Chung, Peter Bubenik, Peter T. Kim