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BMCBI
2005
147views more  BMCBI 2005»
13 years 8 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
BMCBI
2005
151views more  BMCBI 2005»
13 years 8 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
JACM
2000
131views more  JACM 2000»
13 years 8 months ago
The soft heap: an approximate priority queue with optimal error rate
A simple variant of a priority queue, called a soft heap, is introduced. The data structure supports the usual operations: insert, delete, meld, and findmin. Its novelty is to beat...
Bernard Chazelle
JCT
1998
193views more  JCT 1998»
13 years 8 months ago
Fractional Kernels in Digraphs
The aim of this note is to point out some combinatorial applications of a lemma of Scarf, proved first in the context of game theory. The usefulness of the lemma in combinatorics...
Ron Aharoni, Ron Holzman
SIAMDM
1998
89views more  SIAMDM 1998»
13 years 8 months ago
String Noninclusion Optimization Problems
For every string inclusion relation there are two optimization problems: find a longest string included in every string of a given finite language, and find a shortest string in...
Anatoly R. Rubinov, Vadim G. Timkovsky
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