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» Logic-Based Modeling in Systems Biology
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BMCBI
2006
141views more  BMCBI 2006»
15 years 4 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...
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BMCBI
2008
166views more  BMCBI 2008»
15 years 4 months ago
Learning transcriptional regulatory networks from high throughput gene expression data using continuous three-way mutual informa
Background: Probability based statistical learning methods such as mutual information and Bayesian networks have emerged as a major category of tools for reverse engineering mecha...
Weijun Luo, Kurt D. Hankenson, Peter J. Woolf
MOBIHOC
2003
ACM
16 years 4 months ago
The shared wireless infostation model: a new ad hoc networking paradigm (or where there is a whale, there is a way)
In wireless ad hoc networks, capacity can be traded for delay. This tradeoff has been the subject of a number of studies, mainly concentrating on the two extremes: either minimizi...
Tara Small, Zygmunt J. Haas
BMCBI
2010
144views more  BMCBI 2010»
15 years 4 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
BIOCOMP
2006
15 years 6 months ago
A Relational Genomics Search Engine
We report on the development of a relational genomic search engine that integrates search of structured biological data and biomedical literature. After identifying an optimal prep...
Jay Urbain, Nazli Goharian